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Listen "122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking"
Episode Synopsis
We discuss GAMBIT, software for accurately classifying bacteria and eukaryotes using a targeted k-mer based approach.
GAMBIT software: https://github.com/gambit-suite/gambit
GAMBIT suite: https://github.com/gambit-suite
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
https://doi.org/10.1371/journal.pone.0277575
TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization
https://www.frontiersin.org/journals/public-health/articles/10.3389/fpubh.2023.1198213/full
GAMBIT software: https://github.com/gambit-suite/gambit
GAMBIT suite: https://github.com/gambit-suite
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
https://doi.org/10.1371/journal.pone.0277575
TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization
https://www.frontiersin.org/journals/public-health/articles/10.3389/fpubh.2023.1198213/full
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